Journal: Viruses
Article Title: Clinical, Laboratory, and Molecular Epidemiology of an Outbreak of Aseptic Meningitis Due to a Triple-Recombinant Echovirus in Ashburton, New Zealand
doi: 10.3390/v14040658
Figure Lengend Snippet: Whole genome Simplot BootScan analysis with the query sequence of strain NZ/Ashburton/17WQ2027G/2017-08-20 (accession number MW586892) compared to Echovirus E6 (accession number KP289439), E11 (accession number KP294524), and E30 (accession number KY888274) reference sequences. ( A ) Similarity plot analysis, ( B ) Bootscanning analysis on the putative recombinant strain and its parental sequences. The enterovirus genomic organization is shown in the top.
Article Snippet: A Simplot BootScan v. 3.5.1 [ ] analysis was applied to a ClustalW alignment of the de novo assembled enterovirus genome MW586892 (strain NZ/Ashburton/17WQ2027G/2017-08-20) with echovirus E6 (isolate E6/P735/2013/China, accession number KP289439), echovirus E11 (strain 520k-YN-CHN-2010, accession number KP294524) and echovirus E30 (strain 14-397 collected 2013, accession number KY888274) sequences.
Techniques: Sequencing, Recombinant